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Species belonging to selected taxon:
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
ABOUT THIS RECORD
ID:
MNEST046396
species:
Hordeum vulgare
source:
microPC, original name:
miR166
Taxonomy by NCBI:
Hordeum vulgare
Hordeum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CGGACCAGGCTTCATTCCC
miRNA*
GAATGTTGTCTGGTCCGAG
mismatches:
2
bulges:
0
View larger
pre-miRNA
GG
GAATGTTGTCTGGTCCGAG
ACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTT
CGGACCAGGCTTCATTCCC
dot-bracket secondary structure
((
(((((..((((((((((((
((((..((((.(((.((((.....)))).(((.......)))..))).))))..))))))
))))))))))..)))))))
SIMILARITIES
miRBase
osa-MIR166c
:
5e-52
PMRD
osa-miR166c
:
5e-52
microPC
miR166
:
5e-52
UniProt
no hits
RFAM
mir-166: 9e-51
Identical with:
osa-miR166c
from PMRD (
MNEST048846
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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